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Eduction in their synthesis remains to be determined. b) Strain differences at 24 hr after infection Extending the analysis to mice infected 24 hr earlier we gained some additional insight into the response pattern. Three gen-Ali et al. Proteome Science 2010, 8:34 http://www.proteomesci.com/content/8/1/Page 10 ofTable 2: Changes in protein expression between wild-type and SP-A-/- mice for control
Cell 10K protein) (CC10) (CC16) Ceruloplasmin isoforms Chain A, Crystal structure of novel mammalian lectin Ym1-suggests a saccharide binding site Chain B, Chimeric human mouse carbonmonoxyhemoglobin (Human zeta, Mouse beta 2) Chia protein Coiled-coil domain containing 122 Complement component 3 Complement component C5 Contrapsin (Serine protease inhibitor A3K) Creatine kinase M-type (EC.2.7.3.2)
Ntrol, 4 hr post infection and 24 hr post infection: percent changes with significance for all identified proteins corresponding to reference gels in Fig. 2 (Continued)33 34 35 36 37 38 39 40 Glutathione S-transferase, alpha 3 Glutathione S-transferase, alpha 4 Glutathione S-transferase, mu 1 Glutathione S-transferase, omega 1 (Similar to) Glutathione S-transferase, Ya chain (GST class-alpha) (Ya
Ntrol, 4 hr post infection and 24 hr post infection: percent changes with significance for all identified proteins corresponding to reference gels in Fig. 2 (Continued)33 34 35 36 37 38 39 40 Glutathione S-transferase, alpha 3 Glutathione S-transferase, alpha 4 Glutathione S-transferase, mu 1 Glutathione S-transferase, omega 1 (Similar to) Glutathione S-transferase, Ya chain (GST class-alpha) (Ya
(CC16) Ceruloplasmin isoforms Chain A, The Crystal structure of novel mammalian lectin Ym1-suggests a saccharide binding site Chain B, Chimeric human mouse carbonmonoxyhemoglobin (Human zeta, Mouse beta 2) Chia protein Coiled-coil domain containing 122 Contrapsin (Serine protease inhibitor A3K) Creatine kinase M-type (EC.2.7.3.2) (Creatine kinase M chain) (M-CK) (Similar to) Ferritin light chain
Han WT mice both at baseline (-23.3 ) and after 4 hr of infection (-89.53 ), but by the 24 hour time point its levels weremarkedly higher in the SP-A-/- mice (93.8 ), indicating a delayed response in the SP-A-/- mice. c) Potential pathways affected by changes We also used the Ingenuity Systems Pathways Analysis program to better understand the functional implications of the absence of SP-A, both
Ot detectable (ND) in SP-A-/- mice.lower than at 4 hr (40/19 = 2.1), although the increases continue to predominate. However, most of this change is due to the PMM group, which has reverted at the 24 hr point post-infection to having more than twice as many proteins (9 of 13) at reduced levels in the SP-A-/- mice, as was the case in control (baseline) SP-A-/- mice. The overall numbers of increase
(?- or -shaped response pattern) toward the levels seen under baseline conditions, suggesting a peak response at 4 hr(or at least earlier than 24 hr). 3) In a third set (n = 5), levels of some proteins at 24 hr were continuing to either increase or decrease from levels seen at 4 hr, suggesting slower and/or more sustained responses to infection. With respect to all identified proteins, the ratio


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